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Strange low contrast in middle of negative Fuji gsw690ii

Have you tried taking the same photo with a fully wide open and a fully closed down aperture?

If it’s small & distinct wide open and becomes larger stopped down it might be something wrong with the very centre of the outside element of the lens.

Have you cleaned it yet with a drop of lens cleaning fluid on lens cleaning tissue? That might clear it up, or, show there is something going on, such as an area where the lens coating has been somehow removed or reduced?
 

I second this opinion. I had a similar problem with a Hassy 80mm F/2.8 Planar mounted via adapter to a Canon digital camera. Turns out the adapter was not properly flocked inside and the internal reflections resulted in images which exhibited the same kind of problem you are experiencing. It was not on every exposure, and was most prominent in one patch of the image -usually the center, and most notable in studio portraits shot against a solid background. Perhaps the internal surfaces of your lens or camera, the diaphragm blades in the interlens shutter, or even your lens hood has a shiny spot that is causing internal reflections when the light hits it just right.