Don’t unnecessarily scratch your camera no matter how minuscule the scratch.
Just use tape or use a fine marker drawing arrows. More precise, and completely invisible once you’re done.
Even if they are pretty cheap, these folders are irreplaceable.
With that off my chest, I have a hard time seeing how this would work precisely.
Determining accurate focus at infinity is rather hard. A target 20 meters away is going to be only slightly less sharp than a target at infinity, even wide open. There is much room for interpretation between those two.
Much better to use close focusing, especially the distance the lens was designed to optimally focus at.
The scratch will not be seen when the focus scale is put back on, but a marker is a good idea. When you examine the negatives in an enlarger it's easy to see where the focus lies, so the room for interpretation is tiny. And when in use, the camera is not often used with fully open aperture anyway, and with scale focusing, even when using an accessory rangefinder, having some depth of field is important to "correct" for small focusing errors anyway.