I've never had multiple sets of graduates, funnels, and beakers. Never had a problem I couldn't easily trace to camera, film, or my own error.
Now bottles, I don't interchange -- in fact, these days, I buy them fresh for under a dollar, at the grocery store (I have to discard the club soda that comes in them, though). PET with a good cap seal is one of the best materials, and much cheaper than glass. Since my chemicals are stored inside a cabinet in my (dark, when I'm not in there) darkroom, I don't worry about protection from light; clear PET is fine.