It's quite possible that the blue coloured base will affect contrast on VC paper.
It is, but I never noticed it - and to be frank, I never worried about it either. I've shot a bit of blue-based x-ray film and enlarged it onto VC paper, too. Contrast filters worked normally.
will the blue layer act as a filter? I mean like a contrast filter
Look at it this way - if all you throw onto the film is green light, the blue tint to the base will never make that light go blue, will it? So naturally, this won't limit your lowest attainable contrast, since that will still be pure green light. On the opposite side, pure blue light will still give the highest grade the paper can do for you. So there's no problem there, either.
In the middle, there may or may not be a little shift with your grade 2 filter maybe giving 2.3 or so. IDK. I'd just not worry about it.