I guess he was compensating for "focus shift" when stopping down, which is a characteristic of some lens designs.
"Focus shift" is a bit of a misnomer, because it seems to suggest that the focal length of the lens changes as it is stopped down. What's really happening is that as one stops down and spherical aberration is corrected, the point of sharpest focus might appear to change. If I'm using a lens that is considered to have focus shift (like a Dagor, for instance), I might check focus at an intermediate stop and the shooting aperture to be sure.
As to whether the new Cooke convertible exhibits focus shift--I'd ask over in the Cooke thread on f32.net, since Barbara Lowry monitors that board, and there may be one or two folks who actually own the lens and can report back.