I use inexpensive plastic bottles, and have found that when making new fixer, it is generally better to just use a new bottle. I am a fairly low volume user, so I only mix new fixer every few months. With higher volumes, this could be an issue
I usually use Ilford Rapid Fix, and it develops black material that tends to precipitate at the bottom and stick to the sides. The bottle can be cleaned but it is difficult, and since I use brown bottles, I can't really determine cleanliness at the end.