Pete, the filling mark is when you have enough water to cover the bottom of whatever tank you are using, with the solution bottles in place.
I think you will find that the temperature will stabilise to it's intended accuracy within one hour. This is providing that you also have the solution bottles in place and full of solutions.
I would assume that with a water circulation method employed, you could halve the one hour stabilisation time, but I wouldn't be 100% sure about that.
When I was doing a very large batch of E6 many years ago, I got my father in-law to switch the CPE2 on about two hours before I came home. The temperature was always perfect, every evening for four weeks I developed four rolls of E6.
My late father in-law, who served in the German army as a photographer, couldn't believe the consistant quality I obtained. He went back to Germany with some of his best ever, holiday slides.
Mick.