Do Vision3 films generally require longer bleaching/fixing?
I wouldn't expect so (with the caveat that I've never processed ECN-2 film of any stripe). Bleach time ought to be primarily a function of bleach activity and silver grain size, and since Vision3 is known for fine grain, correct strength bleach ought to produce the necessary results in the same time on ECN-2 film as it would on C-41 stock.
Now, I've used Flexicolor bleach for some years, but I've always given the C-41 small tank recommended bleach time (four minutes, IIRC, I'm not at my home computer where I have the documentation stored). If the bleach in use isn't Rapid Access type/strength, that may be the problem.