I don't know when you heard Dan Burkholder say to use matte black ink, but my guess is this is from the early era of digital negatives (correct me if it is more recent.) At the time, the UV opacity from PK ink was not adequate to get fog-less prints. Also the transparency media coatings were not receptive enough for higher ink loading. MK in general has higher UV opacity than the PK. This led some of the early adopters like Dan Burkholder and Ron Reeder to recommend using the matte inks to make digital negatives.
Over the years though the newer printers, like those from Epson, came out with more opaque PK inks. Additionally media companies like Pictorico developed better coatings that could take higher ink loading, designed specifically for the PK inks. In general, the MK ink does tend to run more as it is not absorbed completely on the transparency coating. It also takes longer to dry to touch, causing smears if not careful. This is why Pictorico recommends using PK inks for their media.
However, if it using the matte inks works for you workflow, there is nothing that says you must use the PK inks.
:Niranjan.