Try Invisible Glass
I have the same problemonly with the plain glass in my glass carrier. I've tried windex, including the so-called streak-free sort, and ended up with a haze on the glass. A recent search on photo.net turned up a suggestion for Invisible Glass, which is supposed to be widely available in auto parts stores (I found it in Kmart). I tried it out yesterday and it looks like it may have done the trick. I'll reserve final judgment until I can examine the glass in the dark under the enlarger light, the acid test.