I'm curious -- what did the 30 LEDs cost for this? And how much additional went into the power supply? I have a D2, currently with Zone VI cold light, that might be a good candidate for this kind of conversion.
Given the non-linearity of resistive dimming of LEDs, I'd be tempted to use a chopper circuit (like a DC-motor speed control, possibly lifted from a dead cordless drill or similar) for each array to control relative brightness, or else just split print as I've been doing with under-lens filters with my cold light, using separate timers for the two colors. Chopper speed controllers can be bought as spare parts from companies that repair these cordless tools, though a trigger isn't exactly the control input I'd like to have; I'd bet I could replace the trigger with a knob, though, since the trigger itself is just a variable resistance that supplies a control voltage to the chopper.
Have you tested the swing-away red filter? I think you'll find it gives you, not red light, but blackness -- though the light you have may look whitish in the dark (especially under safelight, which adds a yellow or red component), there is probably no emission that will pass an under-lens "safelight" type filter. In the end, you'll almost certainly wind up having to add some red LEDs if you find you need red light for any reason (though I can't offhand imagine why you would for B&W, unless you need to adjust focus after placing your paper for some reason).