The Fuji raw converter back in the day was Hyper-Utility HS-V3. I used it with the S5 Pro that I owned for a while back around 2007.
Honestly, the appearance of the "12MP" files generated by HS-V3 was obviously interpolated, and for my taste the files didn't stand up well to further processing. After some initial experiments with the interpolated files I stuck to 6 MP. But if you're determined to try it for yourself, HS-V3 is what you want.
BIG caveat: I'm actually not entirely sure of what HS-V3 did with the S2 files - I'm familiar with their use with S3 and S5 files. But at any rate, that would be the software to look for.
EDIT: To be clear, HS-V3 did not ship with the camera - it was sold separately as a software product. So you need to search for that.