Something must be messing w/ the indicator. The stop bath (assuming that it is indicator stop bath) is supposed to turn purple when it has become exhausted, not clear. This may be due to the incorrect dilution the op has been using it at. Maybe at that strength there's not enough indicator in there to turn purple, so it has just gone clear? In any case I would dump it and mix a fresh batch at the correct dilution.
For what it's worth, I always used fresh stop when I was using it for film, not recycled stop. And I stopped using any stop bath w/ film years ago because I don't need it. A fresh water wash works just as well. I only use it when I print w/ fiber paper.