I would imagine that the problem with washing fiber paper in drums is that you may not be able to get sufficient water flow/exchange to the back of the print. Keep in mind that the paper base absorbs fixer and fixer by-products and that the back of fiber-base paper is, well, just the paper. Another, related problem is water exchange. Typically, you need running water for washing FB prints and a rather high exchange rate (IIRC, Kodak recommends one complete change every five minutes for at least 30 minutes). You could baby-sit your Jobo, filling and emptying the drum often, if you could make sure the back of the prints were getting washed efficiently, but that seems pretty labor-intensive.
If space is the only real issue, there are some rather thin vertical slot washers that have only a few slots (six or so, not the typical 10-12) that might work for you. They would fit on a countertop next to a sink.
Using a tray with a tray siphon works for single prints and also for multiple prints if you want to stand there and agitate prints for 30 minutes.
Before doing anything, you might want to do some testing with the Jobo. Fix an unexposed print in fresh fix, give it a five-minute spin in the Jobo with a couple of changes of water, treat it with a wash aid for 10 minutes, then wash for another 20-30 minutes with changes of water every few minutes and then test the print.
For testing, use either the HT-2 test or the equivalent test with selenium toner, but instead of just putting a drop on certain spots of the print, make enough test solution fill a tray and immerse the entire print in. Flip the print a few times in the three-minute test period and then rinse and examine. Look especially for staining on the back of the print as well as the front.
Hope this helps,
Doremus