You can't go by the scale markings on the lens. Well, if you shoot w/ the aperture really stopped down you can, but the rangefinder should always be more accurate.
I owned a few Bessa II cameras, but never had to go into them to adjust anything, they're some of the sturdiest folders ever built. Very high quality of fit and finish.
Once you find a way to adjust the RF, you'll need to put the camera on a tripod, use a cable release if necessary to hold the shutter open on B, place a ground glass or something similar on the frame rails, rack the lens to infinity, and see if the image on the GG is sharp w/ a loupe. If it is, adjust the camera's RF to match that and you're done.