Hi Per,
You may be experiencing something Jobo refers to as "Road Ruts" . If you talk to a technician they may be able to give you suggestions to minimize the possibility of uneven developement. I talked to a tech. that ultimately admitted that it was an issue they never solved.
In any case, what worked for me was slowing the rotation speed to 50, and eliminating the pre-wash. Although it would seem a pre-wash would assist in even development, doing away with it helped for some reason.
And eventhough the expert drums have a physical capacity to take x amout of film, lowering the film volume may help. (For example: 6 sheets of 4x5 max and the full 1000 ml. )
Have a look at this thread, it may give you some ideas:
Dead Link Removed
good luck, cameron