With fluorescent lighting, be very careful of mixed lighting. If there's an incandescent lamp or natural light in the room, it's very hard to fix, so if you can't gel all the lighting to the same color temperature, turn off or shade the other light sources.
If it's important, run some tests, but personally, I find that I get more natural results (shadows consistent with midtones and highlights) correcting color up front, and then tweaking the scans if I have to, then trying to do all the correction in post. If you don't have enough light to use a filter, then you do what you can do in post.