For a number of years I did the shuffle thing in trays. That worked reasonably well as long as I limited the number of sheets, but it seemed that I almost always got some minor scratches on the film.
I tried (one time) to use my Unicolor printing drum. In theory, the little rubber thingie is supposed to separate the sheets longitudinally. Didn't work, and I ended up ruining four sheets. Chalked it up to experience.
Last summer, in a workshop with Chip Forelli, I had a chance to use a "slosher" - essentially a six-compartment tray that fits inside an 11x14 print tray. You place individual sheets, face up, in each of the compartments, and then drop the slosher into the trays of chemicals. To agitate, you lift a corner of the slosher and then drop it back into the tray. The film remains in the slosher all the way through washing and photoflo, so there is no opportunity for the sheets to ever touch each other, and since they are always face up, they can't be scratched.
It worked so well that when I came home I dashed out to Home Despot to buy some plexiglass to make my own slosher. Subsequently, I made a second 2-compartment version that works with 8x10 print trays.
For me, a slosher is the way to go. I use either HC-110, dilution H or DD-X.