been there! about a year ago, maybe nine months ago. i too tried my best to clean my trays, from Selenium toner. I got a few tips I can pass along.
first about the yelllow stain, What type of material is your bottle made from? what type of plastic, or . . .? I think the complex salts are interacting with the type of plastic you use.
The crust has residual salts of variety of compounds made from fixing your fim and paper. there is dissolved silver in your fix along with other elements. potentially, a wide variety of salts along with the Hypo. Which one (s)(compound) is causing the plastic to stain? IDK.
the Selenium toner, I too have had issue with. My dedicated tray has a black bottom from toning Foma Retrobrom. I think it is because of the Iodine in the paper, that causes this form to percipitate out, Because it does not do that with Fomabrom 111. and there is HYPO in selenium toner.
After toning paper, I strain through a coffee filter. ( i got this tip from another Apuger) and that seems to eliminate the vast majority of percipitant. the color neutralizes by the next day.