Are the contaminants embedded in the emulsion or "stuck" onto the film? That happens before the film is fully dried, and isn't a storage problem.
Are you using a squeegee or otherwise sweeping the water off of the roll film negs before hanging them to dry? That may explain why they have fewer crumbs, compared to the 4x5's which cannot be effectivley de-watered before drying.
Be certain to use a final rinse in filtered water with a few drops of Photo-flo. You might even consider de-ionized (distilled) water for the final rinse if you have a lot of mineral in your water which can create a calcium scum.
I'm not a big fan of clothes pins. Too many barnacles, too big a bite on the film, and they tend to "drool" water down onto the negative. Try plain, simple spring clamps from a stationary store. Even a fuzzy string from which the clips are hung can shed dust & debris. I hang the clips from metal rods instead. Take a look...
http://www.classicbwphoto.com/Darkroom.html
If the contaminants are loose "floaters", then you have either a static electricity or storage problem. Static electricity is generated when two pieces plastic (the film and the PrintFile sleeve) are separated. If you want to continue using plastic storage, consider using a paper sleeve for the negative. It'll reduce static and makes handling the negative easier too.
Last night I dried 9 big 8x20 inch negatives in a home built drying cabinet, this morning I stored them in folded sheets of Light Impressions Apollo tissue. I have 8 more negatives to process today. I don't fool around when it comes to crap on my film...
Don't let the dust bunnies bite...
Reinhold
www.classicbwphoto.com