can't think why. With most cameras -- the nikon slr is one of them -- the lens stops down when you fire the shutter because the camera releases a lever holding the lens open. On other cameras, such as m 42/Pentax screw mount type cameras, the lens stops down when the camera pushes in on a button on the lens, stopping the lens down.
In either event, the mechanics stopping the lens down are separate from the rest of the camera action and unaffected by whatever else is going on. Stopping the lens down ahead of time just takes that action out of the process ... the shutter fires as normal, light passes through the lens, the picture gets took.
So, no worries, firing with the lens stopped down causes no problem.