An acid stop bath can be disposed of down the drain with no qualms. Just dilute it first and follow with water to purge the line and further dilute. It's not a hazardous material. Acetic acid is the same acid in vinegar and the component of many stop baths. Citric acid, the other most common stop-bath component is basically vitamin C.
Rinse your used fixer bottles after draining well and before filling with fresh fix. The tiny amount of dissolved silver that you'll put down the drain is inconsequential.
A better way of dealing with used fixer is to recover the dissolved silver. You can do this yourself, but I prefer to take my used fixer to a local photo processor (yes, there are still some around). They are more than happy to do this for me since they get the silver they recover and I'm happy because I'm not dumping used fix down the drain. If you have a traditional photo processing shop near you, you could inquire as to their willingness to help.
Alternately, many municipalities allow small amounts of fixer to be disposed of in the municipal sewer system. You could inquire about that too. Fixer silver disposed of this way quickly combines with sulfur compounds in the waste water to become inert silver sulfides/ates/etc.
FWIW, the hazmat disposal site in my area has no idea whatsoever about photochemicals (they treated used fixer like some kind of toxic waste...) or silver recovery. They hauled away five gallons of used fix to be incinerated. Not very environmentally sound afaic.
Best,
Doremus