Clear shadows on your negative have nothing to do with too much agitation. They are signs of underexposure (or possibly too little agitation if it's causing underdevelopment, see below). Increased agitation, as mentioned above, is the same as increased development time, i.e., more development.
More development will, if anything, increase film speed and thus shadow detail, not the other way around. If your negatives are evenly developed and you are comfortable with your agitation scheme, adjust time if you need to (more for more contrast, less for less contrast). If your shadows are blank, adjust your EI accordingly (which might mean you have to decrease development a bit).
For what it's worth, however, you may be underagitating and thereby reducing both contrast and film speed. I have found tray rocking to be totally inadequate. If you develop just one sheet at a time in the tray, try lifting it out of the developer, turning it 90° and re-immersing it every 15 seconds after an initial 30 seconds of continuous agitation. Again, when you change agitation schemes, you will have to adjust development time accordingly (if you like the contrast you're getting now...).
If you want to develop more than one sheet at a time, you will have to learn to shuffle. There are lots of posts here and elsewhere about shuffling techniques (many from me), so a search or two should turn up lots of info.
Also, the biggest problem with agitating in trays is too much edge density caused by developer swirling around the edges of the negative when immersing them. Avoid pushing the negative down quickly and causing this turbulence.
Best and have fun,
Doremus Scudder
www.DoremusScudder.com