Not sure from your description but it sounds like in post #2 you describe undoing either a rear lens cell or a rear retaining ring (I am not sure if this retains the shutter and lens onto the focusing assembly).
Did you have a look at
http://feuerbacher.net/photo/repair/KonicaAutoS2/KonicaAutoS2.html ?
Yeah there's a little ring that's attached right behind the rearmost lens element, loosening it releases everything in the lens barrel up to the focusing mechanism. I checked that website out but it doesn't go beyond the frontmost part of the shutter mechanism, so no dice.
Everything in the front of the shutter mechanism works fine, all of the pins engage with the wheel properly, the only thing missing is the little lever that makes the shutter selections click into place but that's just because I was too lazy to put it into its place for the pic
Behind we have the aperture control, shutter windup mechanisms, and shutter release lever; though the aperture mechanism itself is hidden behind a metal plate.
A is the shutter windup mechanism, the film advance lever rotates the bit on the camera body's side, which turns the pin on the barrel's shutter mechanism.
B is the shutter release, when light conditions allow for it, it releases down and fires the shutter.
C is the aperture lever, turning the the aperture ring raises and lowers it, which in turns moves the little pin that controls the aperture.
D and E are a mistery to me
D winds up when using the the film lever, and then it releases in the way shown by the golden arrow once you fire the shutter, what it does is a mistery to me. I believe it connects with E, a spring-loaded (spring outlined in pink) lever which doesn't appear to interact with or control anything at all, whether in manual or auto more.
No dice finding what the hell, likely about A or B, is preventing the bottom half of the barrel from retracting when focusing to infinity. The only thing I can think of is having to shave off a milimiter or two off the pins on those two they're barely a bit too long, which shouldn't cause any kind of issues but I'd still like to avoid if possible for obvious reasons.
Furthermore it appears that whatever the auto aperture mechanism is, it sits between the previously shown sections of the barrel, which I'm sure is going to be quite a bit more complex and harder to both tear apart and put together than what I've seen up until now, especially having to go blind due to the lack of decent references on this
Someone lend the man a hammer.
Don't give me ideas lol