I agree it's moot point if you just want to shoot along with adapted lenses on the digital camera.
But for me and with rangefinder-lenses there is an added benefit if the flange is perfecly shimmed (I will look into this, thanks a lot to r_a_feldman): You can crosscheck the adjustment of the lens for the rangefinder-camera by focussing on objects, taking note of the position of the scale and swapping them to the digital camera. But you need a perfect lens as a reference to start with the shimming or need to improvise a collimation device.
In all this you are running into a likely different shim for every lens. I can appreciate your desire to have it perfect. I can only see a need for it if there is an actual focusing issue causing miscued photographs as result.
Adjustments are only made at short dead end of scale and infinity.
The more I think about it, the less I see accuracy as main point of distance scale on lens barrel, with some exceptions on macro lenses, but even that is doubtful.
On a rangefinder I need to see a close match between what rangefinder shows as focused on and corresponding result in photograph. Mismatch means rangefinder adjustment. If several lenses on same body show differing focus results, problem is with lenses. How many cases are there of having reputable lenses made for a rangefinder not following alignment formula ? I've not heard of that being an issue. And even more so if the nature of using a rangefinder is considered.
As we are talking adapters for digital body, if focus peak confirms the intended target, there should be nothing else to it, unless in image there is mismatch, but that will have nothing to do with how precisely adapter was made, but issue with focus peak itself.