What you are describing is an annoyance, but not really a problem. If the camera/lens combo is focusing correctly in spite of the RF misalignment, and since you know what to look for in the VF, you can use the equipment effectively. No need to mess with anything.
That said, the lens may be shimmed to correct the discrepancy - this is well documented but tedious. Remember, you are dealing with two things: optical alignment and RF coupling. Right now, the more important optical alignment is seemingly correct; you would be trying to adjust the optical alignment to match the RF coupling of the lens (since the latter is fixed by the helical and the former is adjustable by minutely moving the optics within the barrel). The discrepancy may be due to the slightly different spec of Leica standard and Soviet lenses, or it may be dubious quality control or someone later reassembling the lens incorrectly; the cause is not particularly important.
Adjusting the RF is not advisable in this case, but in the event you need to, it is incredibly easy to do (seriously, I've adjusted Canon RFs in 15 minutes, working slowly).
Personally, I'd say leave it alone unless you are at least somewhat experienced with mechanical camera repair.