RF lense might have focusing problems if serviced and reassembled incorrectly, it's always important to calibrate them with the RF at max and minimum distance.
Their are no issues with the 90mm APO Summicron-M. It's one of the the world's best lenses. If there are focus issues it's, as cuthbert suggests, due to an individual lens being out of adjustment. A CLA will take care of that.