Thanks, eumenius. Knowing that the film is virtually bulletproof will help me diagnose the problem. I knew it wasn't the JOBO, of course. The JOBO never even entered my mind as being the culprit. The emulsion side of the film never even touches the tank although I'm not sure whether the scratches are on the emulsion side or the base side. I had assumed that they were on the emulsion side but it's possible that they are on the base side. I will see if I can determine which side they are on. I suppose I could coat a bit of each side with, say, a highlighting pen and see which side shows that the color has been absorbed into the scratches. I'll mess with that later today. If the scratches are on the base side, then I guess it would be possible that the scratches happened when the film was inserted into the drum but I doubt that as well. The drum was perfectly clean and the fine scratches are distributed evenly over the surface of the film and are directional across the short dimension. If they were caused when loading them into the drum, the scratches would run along the lengthwise dimension of the film since the film slides in that way. I left about an inch sticking out above the tubes until all the film is loaded.
Keep in mind that the scratches are not visible at all when the transparencies are viewed on a light table. If you only view your film on a light table, you would never see any scratches like this on your film even if they were there and you wouldn't see them in detailed or darker areas either. If I hadn't held them up to a light and viewed them with a lupe when I took them out of the drier, I would never have known the scratches were there. Normally, I just view them on a light table.
As for my tap water, I don't think that's the culprit. As I said, I have very finely filtered (2 micron) water. It is perfectly clear with absolutely no visible particulate matter in it at all. Besides, I have never had this problem with b&w film even when using my water without being filtered. I also have doubts that the scratches are occurring when the film is dry. If the film is bulletproof when it is wet, it is even more bulletproof when it is dry. All films are most vulnerable to scratches when they are wet, of course. I never squeegee film. I just hang it in my film dryer. Of course, it's possible that the film was defective as it came from Fuji, but that is highly unlikely as well. But I will keep that in mind and see if the problem persists with I use film from other boxes. Thanks for pointing out that possibility. My other boxes of film are from a different batch number.
My best guess at this point is that the scratches occurred during the stabilizer step. Although I used distilled water for that step, there is a possibility that there was something in the tray that became suspended in the stabilizer. But, again, that is unlikely as well because I always clean my trays very well after using them and I rinse them before using them just to make sure there is no dust, etc. in them. It's just a habit I have from over 40 years of processing film in trays. Also, even if there were particles in that tray, I don't rub the film together anyway. But I was not as careful when I agitated them in the stabilizer this time because they were just test shots that I was going to throw away anyway. That's the step I will change next time. I will stabilize each sheet separately and see what the results are. As I mentioned, the last batch that I processed (which was my first batch with the JOBO), did not have those scratches - well, they had a few but not nearly as many. The only difference between the way I processed the two batches was that I stabilized each sheet separately with the first batch.
Again, thanks for the info. I will keep it in mind as I try to diagnose the problem. Your suggestions helped me to think this though better. Sorry for rambling out loud here but, by doing so, someone may have additional suggestions since they will know my process better.