If you`re measuring in the range of 0.01mm dust should be a factor to consider. The digital picture of the film sitting in the camera isn`t that clear, but i think i see some dust on the film. If the inside of the camera hasn`t been cleaned thorough, there also can be dust on the film outside the cartridge.
At 0.01mm even a fingerprint on the film base may be measurable.
Also an acetate-base does shrink by age. I don`t know how much it will shrink in thickness and how old the film was you tested - but as acetate also does age depending on humidity you may have gotten these results because some of the film was sitting inside the cartridge (for years?) and some outside.
I`d use new film for such a test - and watch for fewest dust possible.
"Where should the focal point at infinity reside? On the film surface."
Not quite sure about this. If a film has many layers, like color film, the focal point of infinity may reside in the emulsion - not on the surface. I`m not sure about this, maybe this was from a time when emulsions of films were thicker than today... but i think i read something about this, somewhere, sometime...