"I was just curious if the collapsible jugs with all the air pushed out would work like the chemicals added to top off the top of the solutions."
Yes, the idea is the same. If the seal is tight, only the small amount of oxygen in the tiny air bubble at the top of the accordion container will oxidize the solutions.
What I do is have a bunch of brown glass bottles of different sizes. I keep them very well labeled. Seven one-gallon bottles and 35 250mL bottles to start (5x250mL per chemical). Each 250mL bottle equals one Jobo batch in my 3010 tank. When I have to refill all 35 250mL bottles, I put marbles into the gallon jugs to take up the air space. A bit of a hassle, but it works. Next time I have to refill all the 250mL bottles, I put the remainder into half-gallon bottles....etc. etc. until all gone. This is such a process that I should get more accordion containers, but they are pricier than the glass ones (and I got the glass ones for free), and I just haven't got around to it yet.
Some solutions may not expire due to oxidation, but due to other chemical reasons. I know from experience, for example, that no matter how air free it is kept, C-41 developer goes south after a certain time. I don't know what E-6 chemicals, if any, behave like that, but you should find out (and so should I, since I use the Kodak Single-Use E-6 kit as well).