Actually, its not a good idea to focus through the red filter - the fact that the red component of light focuses at the paper plane does not meand that the white light that actually exposes the paper will be focused.
Instead, I would use the red filter as a way to block the light while leaving the lamp on. When you switch on the lamp, the heat from the lamp causes tbe temperature of the negative to increase. Eventually, the negative will "pop" in response to this heat. You don't want that to happen after you focus because it means that the image on the paper will no longer be in focus. Careful printers focus on a scrap sheet of paper, and then either swing the red filter under the lens while the actual printing paper is loaded into the easel, or else they will switch off the lamp, load the paper, and then switch the lamp on for a few seconds while holding a card under the lens for a few seconds to allow the negative to return to the temperature at which it was focused.