Place the film in place of the photo paper, I assume you will be using 4x5" or 8x10" sheet film for this.
You would have to filter the light, since film is much more sensitive than paper, you got room for filtering more I reckon by logic.
I would balance the light or filtering to neutralise the orange mask first.. so probably daylight balance the backlight and then filter with the opposite of the negative mask (however you want to create that filter, or calculate it and find something appropriate).
Then add your red/green/blue filters for each exposure on top of that.
For example a 100 speed film should be 5 and 2/3rds of a stop faster than typical paper, thus I dont think that much filtering without increasing the backlight would be much of a problem
Though someone who's actually attempted this may give better advice than me.