I have no experience with the Freestyle kit (nor C41), but I noticed that the Kodak document Z131 (for Flexicolor C41) states that the mixed developer should have an amber color.
I have been doing a lot of RA-4 (similar to C41?) recently using the Kodak chemicals and I noticed that the developer started out light amber and eventually became quite dark (darker than the blix) after about 30 8x10 prints using the same 1L solutions. This is, of course, well outside of the recommended 16 prints per liter. There was a definite color shift and change in exposure, though by compensating, I was able to still get good prints. For C41 negatives, this wouldn't work.
Based on this, I would be suspicious of dark brown developer, though I might well be wrong.
Warren N