The light spots do look like sproket holes. If this only happened on just a few frames, particularly if they were near the end, I suspect a very small light leak, either while loading or unloading the camera or while loading the tank. It might be an overzealous luminous marker on some equipment. If it is consistent throughout the roll, I have no idea. Notice that the spots are a bit lighter (greater negative density) and a bit less contrasty than the rest of the scene, like the film was flashed through sprocket holes. (It could also be a scanner artifact. Check the negatives to be sure the splotches are real.)
As for the other problems, the picture is just a little contrasty. You can probably correct that by slowing down the drum rotation to the "F" mark. If you're already there, just shorten the development a tad. Color is less fussy about that kind of thing than black and white, and I have had no problem using fairly vigorous agitation while processing color film.