I have this head on my Omega D-II, and I quite like it. Mine has a V54 tube, and I suspect yours does too, if it's of recent vintage and the light looks basically white.
The diffuser should be resting pretty much directly on the negative carrier (or perhaps the filter, which should rest directly on the neg carrier, since you say you have a filter drawer between the light source and the neg carrier), and the light housing should be resting on the diffuser.
I'm not sure what the mechanical setup of this head is with the Beseler adapter. Could it be that the diffuser actually drops below the filter drawer, and the filter goes between the bulb and the diffuser? That would be ideal if it does, and then you would position the light housing as close to the filter as possible.