Cjbecker gave you a good hint: agitation affects contrast of your negative. More agitation means more contrast, and less means less contrast—as long as you do not reduce agitation so much that you begin using semi-stand, or stand development, which are useful, but quite specialised, rather than general-use techniques, and as such they bring a whole raft of their own issues to deal with.
Similarly, you can influence the contrast by changing the duration of negative development: longer development means more contrast, less development means less contrast. In fact, changing the duration of development is the most common method of controlling the contrast of your negatives, whilst keeping agitation always the same. It is easier to predict continuous changes to contrast levels from development duration changes, than from somewhat discrete changes to agitation patterns. Zone System, BTZS, and many other time-tested approaches to negative contrast control, and the foundation of sensitometry (curves), and, of course, manufacturer recommendations by Kodak and Ilford, or equipment manufacturers like Jobo, advocate keeping agitation consistently same, and adjusting development time to achieve required changes to negative contrast.
If in doubt, do what the manufacturer has recommended. They want your images to succeed, because they realise that you are more likely to use their products if they gave you good recommendations that lead to repeatable, easy, error-free results.
PS. After I posted this, I noticed Doremus's post, with which I fully agree. Sorry for duplication...