If you limit this to currently available manual focus lenses, a lot of the classics are out. For example, the 28/2.8 and 50/1.4 & 1.8 are no longer available in MF, only AF.
Given what's available in MF these days, I'd take the 105/2.5, then either take AF versions of the 28/2.8 and 50/1.8, or buy MF versions used. (I've never been much of one for low-light work, so the 50/1.8 is fine for me...light, sharp as a tack, and great at all apertures.)
On the Nikon web site, only the following lenses are listed in manual focus:
24mm f/2 Nikkor AI-S
28mm f/3.5 PC Nikkor AI-S
28mm f/2 Nikkor AI-S
35mm f/1.4 Nikkor AI-S
45mm f/2.8P Nikkor AI-S
50mm f/1.2 Nikkor AI-S
85mm f/1.4 Nikkor AI-S
85mm f/2.8 PC Micro-Nikkor - REBATE!
105mm f/2.5 Nikkor AI-S
135mm f/2.8 Nikkor AI-S
200mm f/4 Micro-Nikkor IF AI-S
500mm f/8N Reflex Nikkor
35-200mm f/3.5-4.5 Zoom-Nikkor AI-S
70-210mm f/4.5-5.6 Zoom-Nikkor (For FM-10)
It's disheartening that these are all of the lenses that Nikon lists in MF...every time I mount an AF lens on my camera it feels like the lens will fall apart if I handle it too much. (Of course, the last time I bought a new Nikon lens was in the 1980's, so it's not like they're losing my business by limiting their MF lens line.)