The Jobo times will be the same or shorter, but you really have to make your own comparative tests. There are other factors to consider over and above the continuous agitation - fill and drain time, pre-rinse or not, developer choice, and temperature stability. If you are one of the 'stand development' crowd, the time will be shorter
I find I have a little more contrast using my standard time with FG-7 1+15 in the Jobo versus a small inversion tank - maybe N + 0.5 or about 110% of the optimum time for me.
Start with your regular time and a pre-rinse as recommended by Jobo (monochrome - I'll leave the C41/E6 for others), and see what happens. There seem to be two areas of contention - continuous = more contrast, and pre-rinse is/is not necessary. The right method is the one that works for you!