Ralph makes a good point about the non-optimal lens shade that comes with Lee etc 4x4 (100 mm x 100 mm) filter holders. These are usually square and they are inadequate for longer focus lenses. The answer to both of these problems is to make a card with a rectangular aperture in it, like a matte, that sits in front of the hood. The design needs tailoring if lens movements are to be used, of course. One way of checking that the matte is not in frame at all is to run something round the inside of the aperture and see if it is visible - typically I use the tip of my finger. Further modifications could include an 'eyebrow' or flag.
On the same subject, you should also prevent stray light from entering the edges of the filters, any open slots in the filter holder and the back of the holder if it is open. I use black cinefoil (heavy aluminium foil with a matt black coating), but only because I have plenty of it at hand.
Oh, and don't forget that you can get multicoated glass filters for these filter holders as well as gelatin, polyester and resin. And, if it turns you on, you can easily use acetate, acrylic, acrylic and maple syrup, whatever you fancy...
As I've mentioned before, ATG adhesive transfer tape, better known as 'snot tape' is commonly used for fixing behind-the-lens filters.
Best,
Helen